Author: Michael R. Crusoe <crusoe@debian.org>
Description: Enable SIMDE everywhere
Forwarded: not-needed
--- bowtie2.orig/sse_wrap.h
+++ bowtie2/sse_wrap.h
@@ -27,8 +27,9 @@
 #ifndef SSE_WRAP_H_
 #define SSE_WRAP_H_
 
+#define SIMDE_ENABLE_NATIVE_ALIASES
 #ifdef SSE_AVX2
-#include <immintrin.h>
+#include <simde/x86/avx2.h>
 #define NBYTES_PER_REG 32
 #define BYTES_LOG2_PER_REG 5
 #define SSE_MASK_ALL ((int) 0xffffffff)
@@ -109,49 +110,13 @@
 		outval = outval & 0x00ff; \
 }
 
-
 #else /* no SSE_AVX2 */
 
-#if defined(__aarch64__) || defined(__s390x__) || defined(__powerpc__)
-#include "simde/x86/sse2.h"
-#else
-#include <emmintrin.h>
-#endif
-
+#include <simde/x86/sse2.h>
 #define NBYTES_PER_REG 16
 #define BYTES_LOG2_PER_REG 4
 #define SSE_MASK_ALL 0xffff
 
-#if defined(__aarch64__) || defined(__s390x__) || defined(__powerpc__)
-typedef simde__m128i SSERegI;
-#define sse_adds_epi16(x, y) simde_mm_adds_epi16(x, y)
-#define sse_adds_epu8(x, y) simde_mm_adds_epu8(x, y)
-#define sse_cmpeq_epi16(x, y) simde_mm_cmpeq_epi16(x, y)
-#define sse_cmpeq_epi8(x, y) simde_mm_cmpeq_epi8(x, y)
-#define sse_cmpgt_epi16(x, y) simde_mm_cmpgt_epi16(x, y)
-#define sse_cmpgt_epi8(x, y) simde_mm_cmpgt_epi8(x, y)
-#define sse_cmplt_epi16(x, y) simde_mm_cmplt_epi16(x, y)
-#define sse_cmplt_epu8(x, y) simde_mm_cmplt_epu8(x, y)
-#define sse_extract_epi16(x, y) simde_mm_extract_epi16(x, y)
-#define sse_insert_epi16(x, y, z) simde_mm_insert_epi16(x, y, z)
-#define sse_load_siall(x) simde_mm_load_si128(x)
-#define sse_max_epi16(x, y) simde_mm_max_epi16(x, y)
-#define sse_max_epu8(x, y) simde_mm_max_epu8(x, y)
-#define sse_movemask_epi8(x) simde_mm_movemask_epi8(x)
-#define sse_or_siall(x, y) simde_mm_or_si128(x, y)
-#define sse_setzero_siall() simde_mm_setzero_si128()
-#define sse_slli_epi16(x, y) simde_mm_slli_epi16(x, y)
-#define sse_slli_siall(x, y) simde_mm_slli_si128(x, y)
-#define sse_srli_epi16(x, y) simde_mm_srli_epi16(x, y)
-#define sse_srli_epu8(x, y) simde_mm_srli_epu8(x, y)
-#define sse_srli_siall(x, y) simde_mm_srli_si128(x, y)
-#define sse_store_siall(x, y) simde_mm_store_si128(x, y)
-#define sse_subs_epi16(x, y) simde_mm_subs_epi16(x, y)
-#define sse_subs_epu8(x, y) simde_mm_subs_epu8(x, y)
-#define sse_xor_siall(x, y) simde_mm_xor_si128(x, y)
-#define sse_set1_epi16(x) simde_mm_set1_epi16(x)
-
-#else
 typedef __m128i SSERegI;
 #define sse_adds_epi16(x, y) _mm_adds_epi16(x, y)
 #define sse_adds_epu8(x, y) _mm_adds_epu8(x, y)
@@ -180,8 +145,6 @@
 #define sse_xor_siall(x, y) _mm_xor_si128(x, y)
 #define sse_set1_epi16(x) _mm_set1_epi16(x)
 
-#endif
-
 /* compute the max val of a vector */
 #define sse_max_score_i16(inval, outval) { \
 		SSERegI vlmax = inval; \
