602732147ef8e4155535431505a53e49 *DESCRIPTION
6376fe6e77b9c49dbb5d6d26434834ed *NAMESPACE
275fde69bc6dbfa5a0c953d50c330434 *NEWS
2a24f43fa2eef9de5133884d56e6c2ee *R/AAstat.R
ead66359e6bdb7a64d4771830256844c *R/ClassSeq.R
a18a9cf019d3a35371351cf93a406b7a *R/GC.R
1438ca54c729392b4f6071b95715083f *R/PI.R
b7410cdfeadbad2c2944e0d6e2f62795 *R/R_socket.R
2fcd8570dc99758fe548314e437122e9 *R/acnucclose.R
86b7ba18b65ec915e7f1ad400d2f48f9 *R/acnucopen.R
9147239fe2c3de9796596813a3ec3bf8 *R/al2bp.R
2da37d76598c27d9ef1e76f8e002b514 *R/allistranks.R
d8d14a5c5756398086e430e64d95bd42 *R/amb.R
0cf7749c325a806883b2d62a467eca79 *R/as.alignment.R
7f25ed33828f33dbeeb3e584386498c3 *R/as.matrix.alignment.R
1a6b1954cec769109d210ae1f9300b07 *R/autosocket.R
7bdf4f6803bc911d458c042d20771d54 *R/baselineabif.R
ea1d98f8694dea868158ebe34fdf9fcc *R/bma.R
81079506d4d33bf71fc5f188e6e9a306 *R/cai.R
354d9fff0ae2e164eda5819a6ab0225d *R/choosebank.R
2ae9ecaf85457521a6b6619557f4e632 *R/circle.R
e93b3d3ae3a681b947951904d59e7d70 *R/clfcd.R
80e53f6a74d2e100a8d3f368654ff3ad *R/clientid.R
13e75cfac076400d23da00ee8aa70bce *R/closebank.R
1f875bb73cb9429fea83bf7e45625c4b *R/col2alpha.R
34fddcf57c381e803747fa8592e7b760 *R/comp.R
aadcb266dee8794e6d461465e500fd3b *R/consensus.R
9d0f3eb5f338c250eff6a0da93e4172e *R/count.R
ac13ebe8a8186c0f87eda7f5c0881b31 *R/countfreelists.R
6f3dbf66b0a7ba55b76820e48ae934e2 *R/countsubseqs.R
45f065caf103592acfd7853894a57be9 *R/db.growth.R
166123e055afead5a3491faacc8d642d *R/dia.bactgensize.R
ebc28979d2ba1d772ed698182332b4fe *R/dist.alignment.R
dcd12fdc740a6bfd590bece862a9c034 *R/dotPlot.R
0902752bb880d3f1821128c7057af8ec *R/dotchart.uco.R
2eb490bcd36a90ec729869de147b6aa6 *R/draw.oriloc.R
722bf90b09f3a4a6d9ed7975d9c92920 *R/draw.rearranged.oriloc.R
fbf8b398e2f2b571df8a28ddb76c2ada *R/draw.recstat.R
eade48821330973e3f7ca663b67f867e *R/extract.breakpoints.R
07d9aefd22cae9ce3e0cb82f1c30414c *R/extractseqs.R
fd03ad646fef10257c34009b3bc28660 *R/fastacc.R
e5f38a2d9cf20480764fc1f2b32d5449 *R/gb2fasta.R
f028da20ab91ff05a9d5dc4e0a2cc8a2 *R/gbk2g2.R
13c9348aa5fbb603ba48f87d6a7fc4b2 *R/gbk2g2.euk.R
640f57f9c2e3e979b84f6794a3ce374b *R/getAnnot.R
da3bf623e307fbddbfccc61c0b1a0508 *R/getFrag.R
c347f119391d69bef26fa004041ca17b *R/getKeyword.R
4066b4a482d4d3fdef32996a8d1db574 *R/getLength.R
358f3c9309bbf1b5ded348231e58ccb6 *R/getLocation.R
679f18d27f07dfe7ee10185409b2d9d4 *R/getName.R
d52267fb688f9203fbb98bf1ead1f734 *R/getSequence.R
68dfb296284a0575e01c4a9a5a78ed3d *R/getTrans.R
81ca06de646974aa5121aa8b271a6030 *R/getType.R
08419a480b44e08e1afcefbc6c53b347 *R/getlistrank.R
81287cfac26d8d3e2dd299a2ec609319 *R/getliststate.R
cbbe9fee10839be8dbe4ac320aa61d88 *R/gfrag.R
2c1cf763521dcd38118f2ed45ba198bb *R/ghelp.R
eef037808b87f9acf59d01bfefed0385 *R/isenum.R
52fd20d99f9737d5ba686a661d080f1b *R/kaks.R
ff6206906f3a46f72f641eca1b751f9f *R/knowndbs.R
04fde6d4fdc18035aecf21d9e6b48c61 *R/lseqinr.R
fd92ab3958814f4308ccc10282ded3e6 *R/modifylist.R
bbbfac9cea22d20f639550c5c3d81371 *R/move.R
e3ed6c9e7617ba9ccc20b02a44cde293 *R/oriloc.R
6a70118cc0f3d8b4cc2546a67af7f3f4 *R/parser.socket.R
983a682e7f3dee2ae06ce47b972f3b49 *R/peakabif.R
bef1101fa73ddbe3641e5319395087e4 *R/permutation.R
8c5939dfa1c8547f28920b941c693dd2 *R/plot.SeqAcnucWeb.R
7d52400d9fdb4f793351c628314926ff *R/plotPanels.R
d1ad4d3009692c90002eea1624470a4b *R/plotabif.R
5c84848aa42065a08265437b418350f2 *R/plotladder.R
04255e04d0d839bd25eae151300eca51 *R/pmw.R
86322c15e28b4a5a06608ae87e0524a2 *R/prepgetannots.R
bce9e26d5c02725157c5a3640c1987e7 *R/prettyseq.R
4e4307997ead919715173fbfa144b768 *R/query.r
0df8067e13a99ec2e88db4de0d207299 *R/quitacnuc.R
17e236154e56b88e1f2146711b590732 *R/read.abif.R
8fdd2600865c4006437659795d1b337e *R/read.alignment.R
71433fdd40198f388119cd4d53705aa2 *R/read.fasta.R
84f4bb32ce9313dfbf4d0bf256426b26 *R/readBins.R
b3abe5613c45e964221826154cce0727 *R/readPanels.R
ed2799316fd60138140df7be2eb0fb75 *R/readfirstrec.R
e0544e3fc343a2ebc5da3d872cb1c133 *R/readsmj.R
24515da785ca98c1050d3af05be59323 *R/rearranged.oriloc.R
e9d84bc80ce2073234a3064bafbc9540 *R/recstat.R
a74c6e3508f8e4dd334352cd9a0fe6d1 *R/residuecount.R
4d5a4ac8a736b63a9e8aa7ab0d102f96 *R/reverse.align.R
017e6268d79d766db915d6a288da2638 *R/rho.R
3e93199dd0da6c85d7873f44766c8e17 *R/rot13.R
f8e865d8b29cfc6b6dd37c3b8db0817c *R/s2n.R
78a68ce8d723496ff5fe21308a2497a0 *R/savelist.R
5913f20038696e2a3120efde056967f5 *R/setlistname.R
d0f82f27e9d0d98e3354da01174d1ac3 *R/splitseq.R
b9fdfa281c768b8679f115def7010470 *R/stresc.R
a5c3446a642fcb1d449165249a66505c *R/stutterabif.R
b8daf245259a45d667134d5defcc986e *R/swap.R
8fec3da3065e6f99dd25647d65d0b12f *R/synonymous.R
47b65721fcbe1264f6eb6a59babdf6fc *R/tablecode.R
31aa3a4388aae1d3e365f86b4a48f102 *R/test.co.recstat.R
9d6a8edb38dc188f3be4eccff8b7b789 *R/test.li.recstat.R
b876d8bd7f3974085cebd229dddea72d *R/translate.R
628202bd7fb5325b71d4c87544daf63d *R/trimSpace.R
de0215d03e7d553c4b5ba895b05712a3 *R/uco.R
2a480464ab21699a588cbf0ee63214f2 *R/util.R
8005c6152029851bcc4194cf4d58cdcf *R/where.is.this.acc.R
d4aed61fe9dc7de84958e7b93ea30ed3 *R/words.R
aa296075dd2c2c2e8225788b2615499e *R/words.pos.R
2b6da219db928394eba73405e8a3b7eb *R/write.fasta.R
46a6e7ac2d0f6981e30795c1a4652eb0 *R/zscore.R
ea124a494ad7922985532ad3b308e4d5 *build/partial.rdb
7eb1b6b2f3c88a21d3157b3dce5784e7 *data/AnoukResult.RData
ae8963d06a0fe337784a58597eb9047f *data/ECH.RData
9af400f0e09bb79784948c8fe9d24cc9 *data/EXP.RData
9423f34956c043ade38000db6b4a076e *data/JLO.RData
a5062809357a2fe2539c70140d930245 *data/SEQINR.UTIL.RData
0ca889f87158450afa4f5e0f6d75793a *data/aacost.RData
ef7a2388690a7a42fa80a61b59fa7b3a *data/aaindex.RData
4e579ffcefb1b2129ff613cf7e8f6159 *data/caitab.RData
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279b7a18ac9fd828ee1d97da7d624c0c *data/clustal.RData
fb8b1f04480e80f0ff6285e4fd2f4b57 *data/datalist
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73a62fb8d13e65867b848578df50454f *data/ec999.RData
dfb7ca24a9281c0141d9d809913a2552 *data/fasta.RData
8bf3a6dc556fe8c334ce28e995b226f2 *data/gcO2.rda
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815f2c344ad8a36d912eb800184940d6 *data/gs500liz.RData
15993e2f48a694ec715d2213fbf1d3c0 *data/identifiler.RData
6b54c05ce241f77d641b44cebf1d5ba9 *data/kaksTorture.RData
7c4a61f5f188a839865d9a685d53e91b *data/m16j.RData
39a39f632dc193627a8b7cdc20cea37c *data/mase.RData
04148dfd72965d3da40fb5edccb2fd6c *data/msf.RData
f9e74a568a9b9aae22866629759c0e6a *data/pK.RData
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a5062809357a2fe2539c70140d930245 *data/sysdata.rda
5aabe7fba90bd06a7a8fcc9fe9e0aa31 *data/toyaa.RData
5ae4ba427222943c2ba95ef2f0e7d38e *data/toycodon.RData
9cb7067db766c62ff9f45016487fe033 *data/waterabs.RData
138392e59e0e20eee37bb6d5bd1215aa *inst/CITATION
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831e4bb52c0b2ab78a9246dca7e67d58 *inst/abif/2_0000206138_C01_005.fsa
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4e0288d7d9d76672c7ff8ff0d05fe0ad *inst/abif/AmpFLSTR_Panels_v1.txt
008e815eb4a7a94a46461d265c64ae78 *inst/abif/NGM_Bins.txt
9f64398f12a862adadc4ddea9374e5bf *inst/abif/NGM_Pa.txt
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118cf8e86dbab633734283bb8968aebd *inst/abif/Prototype_PowerPlex_EP01_Bins.txt
480c7bcaed36937e62d611aaea8845e7 *inst/abif/Prototype_PowerPlex_EP01_Pa.txt
115afc50e7118a18a18bb7078eb22e53 *inst/abif/samplefsa2ps.fsa
a162dc1c3b4461c33c1644320e84cea5 *inst/sequences/Anouk.fasta
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ca11c1c6cecbb254b394ee24bff10d17 *inst/sequences/ame1.gbk
ce707593c6e9f43ac3f77f2276b2fc73 *inst/sequences/bb.acc
3ef93a6e32d1929ff3ee0abdb5ac96dd *inst/sequences/bb.kwd
8eb44c1f8c1e1b2d40bab5106ec657c3 *inst/sequences/bb.mne
cd5b7b52fe1bd7a49107cfe7a4fa1311 *inst/sequences/bb.sp
48ba932397d95293cf4b497773e83723 *inst/sequences/bordetella.fasta
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d14166d4b9592dedfb53124ea81795a7 *inst/sequences/ct.predict
d0ff0477e562d8aa3c0979a4a33a2226 *inst/sequences/ecolicgpe5.fasta
6dc7e60dac18296f9e1d719f39f03b84 *inst/sequences/gopher.fasta
1d5bd50d5ff345e08cb37a8689303e0c *inst/sequences/gopher.names
cf31afbaea651a30e8f2b530483830bb *inst/sequences/hannah.txt
e03266d6ed9efa1dad9755a88e024565 *inst/sequences/humanMito.fasta
c56d8223a10995c70a6f965e46a06b44 *inst/sequences/input.dat
f82ee7968ac65ab690bdc1cfd10f055d *inst/sequences/input.out
dc806adb55559a8486727292e56d58cf *inst/sequences/kaks-torture.fasta
1b714fae98378e5142d7ec658127ef36 *inst/sequences/legacy.fasta
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1e41a172ef6a1eb538aa4471da6d2ac9 *inst/sequences/seqAA.fasta
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717a230459ee63b4bf752db0af85ee7d *inst/sequences/someORF.fsa
05d2cec3375c0599b1872a0697f40b91 *inst/sequences/test.aln
b8cf915491772d56bfd779c64156c424 *inst/sequences/test.mase
2dc0b9b12f1f303cfb7cb6e88418718a *inst/sequences/test.msf
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98fa02321f2d444eb742e45c61ab0ea5 *man/AnoukResult.Rd
131d0036ec0206695bf5d2fc76e23237 *man/ECH.Rd
b477890899d95267de5249664a241350 *man/EXP.Rd
ff186cc91476b4025d94e308d888c6b8 *man/GC.Rd
aae70d4e27e7d89ecff697cb32b688bd *man/JLO.Rd
1f5d21bea7068773e4be2d5f53222b4f *man/SEQINR.UTIL.Rd
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fdda8a20d94b93b4c9dd587763e8ea96 *man/SeqFastaAA.Rd
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77e0cd2af40b5f07142a00165561113b *man/SeqFrag.Rd
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87fbf4e02ee46f23f3ffc143e009ce58 *man/aaa.Rd
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828a1ffa996b4e8ad191091010cd7dd7 *man/aaindex.Rd
2e06e34c27e6289570aa750f11797b0e *man/acnucopen.Rd
4472367be41364ac125ff53890311842 *man/al2bp.Rd
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9b66028b42d96e7429140aa57655d886 *man/getAnnot.Rd
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54545ba9f510e782a006733a3e3e8fb3 *man/getKeyword.Rd
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36cd87460ede81e62b98a146498421a0 *man/getLocation.Rd
08984b8a287f0d4a8463dafd47d0a336 *man/getName.Rd
079d7a8f6263a46bbed6c8393c96fc47 *man/getSequence.Rd
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6c69abe312462e20291bf121926d4529 *man/getType.Rd
dc9361185c4cc068c74f243ae3085fb5 *man/getlistrank.Rd
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