Total number of individuals: 777

Number of individuals with 0 missing data: 668
Number of individuals with 1 missing data: 68
Number of individuals with 2 missing data: 41

Phenotypic Mean = 0.528129
Standard Error  = 0.102162



Allele frequency at locus 1 (G/A) 0.76048 / 0.23952	p(HWE) = 0.227897
Allele frequency at locus 2 (C/T) 0.59880 / 0.40120	p(HWE) = 0.293616

Frequencies of Plausible Haplotype under Linkage Equilibrium

Haplotype [0]	GC	0.455377
Haplotype [1]	GT	0.305102
Haplotype [2]	AC	0.143426
Haplotype [3]	AT	0.096095


After 2501 iterations burn at step 1500


Estimated Haplotype Frequencies under Linkage Disequilibrium

				Estimation	StError		T-Test

Haplotype 1 [0] 	GC	0.447133
Haplotype 2 [1] 	GT	0.313346	0.014096	22.229222
Haplotype 3 [2] 	AC	0.151669	0.011670	12.996173
Haplotype 4 [3] 	AT	0.087852	0.009537	9.212055



			Haplotype Effects
		(Haplotypic effect by comparison to the reference with its 95% CI)

				Estimation	StError		T-Test

Intercept 1	GC		0.295749	0.005675

Haplotype 2	GT		0.00757	0.006076	1.245688
			Diff = 0.00757 [-0.00434 - 0.01948]  p=0.212879

Haplotype 3	AC		-0.01729	0.010006	-1.727418
			Diff = -0.01729 [-0.03690 - 0.00233]  p=0.084093

Haplotype 4	AT		0.00044	0.009228	0.047999
			Diff = 0.00044 [-0.01764 - 0.01853]  p=0.961717



Global Standard Error   0.102162
Residual Standard Error 0.080890

			Covariable Adjustment
Covariate 1 
Column Number 5 		-0.038668	0.006488	-5.960242
			Diff = -0.03867 [-0.05138 - -0.02595]  p=0.000000

Covariate 2 
Column Number 6 		0.055734	0.003197	17.432123
			Diff = 0.05573 [0.04947 - 0.06200]  p=0.000000



Log-likelihood = -510.447366 (Nb studied subjects = 668)
Conditionnal Log-likelihood = 731.953549 (df =  6)



Polymorphism 1 G/A
Haplotypic Background -C	1-3	Diff = -0.01729 [-0.03690 - 0.00233]  p=0.084093

Haplotypic Background -T	2-4	Diff = -0.00713 [-0.02872 - 0.01447]  p=0.517718


Polymorphism 2 C/T
Haplotypic Background G-	1-2	Diff = 0.00757 [-0.00434 - 0.01948]  p=0.212879

Haplotypic Background A-	3-4	Diff = 0.01773 [-0.01096 - 0.04641]  p=0.225768




			LD MATRIX

		 -0.09	
			
		

			P-Value MATRIX

		 0.150	
			
		